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Workshop Program

HSCBB11 WORKSHOP

“ADVANCED BIOINFORMATICS TOOLS & APPLICATIONS”

 

Material, further information and list of participants can be found here.

For the login details, a relevant e-mail has been sent to all the HSCBB members.

For questions or further details please contact Dr. Maria Klapa.


Thursday 6/10/2011 (afternoon)

14:00-14:15 (N. Moschonas, A.Tsakalidis, M. Klapa)

Opening Remarks – Scope of the Workshop 


14:15-14:35 Lecture 1A (N. Moschonas)

Reconstruction of Protein-Protein Interaction Networks: Significance & Challenges 


14:35-15:00 Lecture 1B (M. Klapa)

Literature-Curated Human Protein-Protein Interaction Databases: Characteristics & Limitations 


15:00-15:30 Lecture 1C (T. Sarafidou)

Case-Study: The FRA10AC1-spliceosome protein interaction network 


15:30-17:00 Lecture 1D (E. Theodoridis)

Tools for Biological Database Management: Focus on Protein-Protein Interactions 


17:00-17:30  COFFEE BREAK


17:30-18:30 Lecture 2 (G. Pavlopoulos)

Visualization of Biological Networks and Concepts

cytoscape example


18:30- 20:00 Lecture 3 (C.Ouzounis, V. Promponas)

Biological Sequence Analysis : Tools for Comparative Genomics  


20.00-21.00  Discussion (L. Alexopoulos, A.Armaou, S. Bicciato, C. Ouzounis  moderator: M. Klapa

Integrating Disciplines and Research Approaches in Computational Systems Biology  


21.30 - DINNER


Friday 7/10/2011 (morning)


09.00-11:30 Lecture 4 (S. Bicciato)

Transcriptomic Data Normalization & Analysis 

Integration of Genomic and Transcriptomic Data 



11:30 – 12:00   COFFEE BREAK


12:00-13:45 Lecture 5 (M. Klapa)

Metabolic Network Analysis 

Integrating Transcriptomics & Metabolomics 


13:45-14:00    CLOSING REMARKS



Affiliations of Workshop Speakers:



Note 1: The workshop will take place in the computer room of the Department of Computer Engineering and Informatics, University of Patras and most lectures will involve web search and hands-on exercises


Note 2: Lectures will be in English


Note 3The venue of the workshop is  the computer room of the Dept. of Computer Engineering and Informatics, University of Patras. 


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