HSCBB11 WORKSHOP

“ADVANCED BIOINFORMATICS TOOLS & APPLICATIONS”

 

Material, further information and list of participants can be found here.

For the login details, a relevant e-mail has been sent to all the HSCBB members.

For questions or further details please contact Dr. Maria Klapa.

Thursday 6/10/2011 (afternoon)

14:00-14:15 (N. Moschonas, A.Tsakalidis, M. Klapa)

Opening Remarks – Scope of the Workshop 

14:15-14:35 Lecture 1A (N. Moschonas)

Reconstruction of Protein-Protein Interaction Networks: Significance & Challenges 

14:35-15:00 Lecture 1B (M. Klapa)

Literature-Curated Human Protein-Protein Interaction Databases: Characteristics & Limitations 

15:00-15:30 Lecture 1C (T. Sarafidou)

Case-Study: The FRA10AC1-spliceosome protein interaction network 

15:30-17:00 Lecture 1D (E. Theodoridis)

Tools for Biological Database Management: Focus on Protein-Protein Interactions 

17:00-17:30  COFFEE BREAK

17:30-18:30 Lecture 2 (G. Pavlopoulos)

Visualization of Biological Networks and Concepts

cytoscape example

18:30- 20:00 Lecture 3 (C.Ouzounis, V. Promponas)

Biological Sequence Analysis : Tools for Comparative Genomics  

20.00-21.00  Discussion (L. Alexopoulos, A.Armaou, S. Bicciato, C. Ouzounis  moderator: M. Klapa) 

Integrating Disciplines and Research Approaches in Computational Systems Biology  

21.30 - DINNER

Friday 7/10/2011 (morning)

09.00-11:30 Lecture 4 (S. Bicciato)

Transcriptomic Data Normalization & Analysis 

Integration of Genomic and Transcriptomic Data 

11:30 – 12:00   COFFEE BREAK

12:00-13:45 Lecture 5 (M. Klapa)

Metabolic Network Analysis 

Integrating Transcriptomics & Metabolomics 

13:45-14:00    CLOSING REMARKS

Affiliations of Workshop Speakers:

• Leonidas Alexopoulos, Mechanical Eng. Dept., NTU Athens
• Silvio Bicciato, Biomedical Sciences Dept., U of Modena & Reggio Emilia
• Giannis Iliopoulos, Medical School, U of Crete
• Maria Klapa, FORTH/ICE-HT, Patras
• Nicholas Moschonas, Medical School, U of Patras
• Christos Ouzounis, CERTH-INA & U. of Toronto
• Georgios Pavlopoulos, Electrical Eng. Dept., Katholieke Universiteit Leuven
• Vasilis Promponas, Biological Sciences Dept., U of Cyprus
• Evangelos Theodoridis, Computer Eng & Informatics Dept., U of Patras
• Athanasios Tsakalides, Computer Eng & Informatics Dept., U of Patras

Note 1: The workshop will take place in the computer room of the Department of Computer Engineering and Informatics, University of Patras and most lectures will involve web search and hands-on exercises

Note 2: Lectures will be in English

Note 3: The venue of the workshop is  the computer room of the Dept. of Computer Engineering and Informatics, University of Patras. 

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